RnoEX0064372 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2356520-2371883:-
Coord C1 exon
chr14:2371386-2371883
Coord A exon
chr14:2357132-2357284
Coord C2 exon
chr14:2356520-2356609
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTCCCACTGCAGTGT
3' ss Score
9.66
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAAAGCTCTGGGCACAGCAGGAGGAACACCATGAGCCTCAGTGAGGAACAAGTACGCAGCTTCCTGGATGGGAACCCCACCTTTGCCCACCAATACTTTGAGAAGAAGCTGAGCCCTGAAAATGTGGCAGGGGCCTGTGAAGGTGGTTGCCTGGTGGACTGTGGCAGCCTACGAGAGCTGTGCCAGGTGGAAGAGAGTGCAGCGCTGTTTGAACTGGTGCAGGACATGCAAGAGAGCGTCAATATGGAACGCGTGGTCTTCAAGGTTCTGCGGCGTCTCTGCACCATCCTGCATGCTGACCGCTGCAGCCTCTTTATGTACCGCCAGCGCAATGGCGTAGCTGAACTTGCTACTCGGCTCTTCAGTGTGCAGCCCGACAGCCTCCTGGAGGATTGCCTGGTGCCCCCTGACTCTGAGATCGTCTTCCCTCTGGACATTGGGATTGTGGGCCATGTGGCTCAGACCAAGAAGATGATAAACGTGCAGGATGTGGCAGAG
Seq A exon
TGTCCTCACTTCAGCCCATTTGCCGATGAGCTCACCGACTACGTGACAAAGAACATTCTGTCCACGCCAATCATGAATGGCAAAGATGTTGTGGCTGTGATTATGGCAGTGAATAAATTGGATGGTCCATGCTTCACGAGCGAAGACGAAGAT
Seq C2 exon
GTTTTCACGAAGTACCTGAATTTTGCTACATTAAACCTGAAGATCTATCACCTAAGCTACCTCCACAACTGTGAAACACGCAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(56.7=54.5)
A:
PF0159021=GAF=FE(33.3=100)
C2:
PF0159021=GAF=PD(8.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACTTGCTACTCGGCTC
R:
CTGCGTGTTTCACAGTTGTGG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]