DreEX6057935 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24732104-24736897:-
Coord C1 exon
chr14:24736351-24736897
Coord A exon
chr14:24732427-24732579
Coord C2 exon
chr14:24732104-24732193
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATATATGCTTCACTCTCCAGGAC
3' ss Score
9.24
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
AACTTCACTACAGCTTTGGAGAAATGGCTGCAGTGGACAAGGATGTGGCTGAGAAGTTTTTGGACAGTAATCCAATGTTTGCCAAGCAATACTATGACTCCAGGTTCCGGGCGAAGGTCGTCTCTGACCTTCTTTCGACCACTAAGCAAACCGCAGTGGACATCAGTTCTCACCATGAACTGAGCTCTATGGAGGAGTGTGAGATTATTTTTGACATGGTGCGGGACATGCAGGAGAACCTGCATATGGAGAGGGCCGTGTTTAACCTCATGCGGCATCTGAGCTTTATGATCCGGGCAGATCGCATGAGTCTCTTCATGTACCGCCAGAGGAATGGAATAGCCGAACTGGCCACACGAATCTTCAATGTCCATAAAGACGCTACCCTGGAGGAATGTCTGGTGCCACCAGACAGCGAGATTGTGTACCCGCTGGACACAGGCATTGTAGGACATGTGGCCACTGCTAAGAAGACTGTCAACGTACCTGATGTCACAAAG
Seq A exon
GACAGCCATTTCAGTGACTTTGTGGACAACTTGACAGAGTACGAGACCAAGAATGTGCTTGCGACCCCTATCATGAATGGCAAGGACATGGTGGCTGTCATGATGGCAGTCAACAAGATCGGGGCTCCTCATTTCACTGCTCAGGATGAAGAG
Seq C2 exon
ACACTGAAGAAATATCTCAACTTTGCTAATCTTGTGCTCCGAGTGTTTCACCTGAGCTACCTGCACAACTGTGAAACCAGAAGAGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(56.7=53.5)
A:
PF0159021=GAF=FE(33.3=100)
C2:
PF0159021=GAF=PD(8.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACCGCCAGAGGAATGGA
R:
CAGTTGTGCAGGTAGCTCAGG
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]