BtaEX6032577 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108818344-108821318:+
Coord C1 exon
chr6:108818344-108818811
Coord A exon
chr6:108820838-108820990
Coord C2 exon
chr6:108821229-108821318
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTCATCTTGTAGTGC
3' ss Score
9.96
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGAGCCTCAGTGAGGGGCAGGTGCACAGGTTCCTGGACCAGAACCCCGGCTTCGCGGACCAGTACTTTGGGAGGAAGCTGAGCCCGGAGGATGTGGCCAATGCCTGCGAGGACGGGTGCCCCGAGGGCTGCACCAGCTTCCGAGAGCTGTGCCAGGTGGAGGAGAGCGCGGCCCTGTTCGAGCTGGTGCAGGACATGCAGGAGAACGTGAACATGGAGCGCGTGGTCTTCAAGATCCTGCGGCGCCTCTGCTCCATCCTGCACGCCGACCGCTGCAGCCTCTTCATGTACCGCCAGCGCAACGGTGTGGCCGAGCTCGCCACCCGCCTCTTCAGCGTGCAGCCCGACAGCGTCCTGGAGGACTGCCTGGTGCCTCCTGACTCCGAGATCGTCTTCCCGCTGGACATCGGGGTCGTGGGCCACGTGGCTCAGACCAAGAAGATGGTGAATGTCCAGGACGTGATGGAG
Seq A exon
TGCCCCCACTTCAGCTCCTTCGCGGATGAGCTGACCGACTATGTGACGAGGAACATCCTGGCCACACCCATCATGAACGGCAAAGATGTCGTGGCTGTGATCATGGCTGTGAACAAGCTGGATGGCCCATGTTTCACAAGTGAAGATGAAGAC
Seq C2 exon
GTTTTCCTGAAATACCTGAACTTCGGGACATTAAACCTGAAGATCTACCACTTGAGCTACCTGCACAACTGCGAGACTCGCCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(59.4=54.5)
A:
PF0159021=GAF=FE(35.0=100)
C2:
PF0159021=GAF=PD(3.5=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCATGTACCGCCAGCG
R:
TGTGCAGGTAGCTCAAGTGGT
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]