RnoEX0064355 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56544652-56559830:+
Coord C1 exon
chr18:56544652-56545232
Coord A exon
chr18:56558432-56558584
Coord C2 exon
chr18:56559741-56559830
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGTGCTTCTTTCAGGAT
3' ss Score
12.18
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGAGCAGCTAGAGGTCATCTTAGCCATGGGTGAGGTGACAGCAGAGGAGGTAGAAAAGTTCCTGGATTCAAATATTGGCTTTGCCAAACAATACTATAATTTTCACTACCGGGGGAAGGTCGTCTCAGACCTCCTCGGGGCCAAGGAGGCAGCCGTGGACTTCAGCAACTACCACGATGTGAACAGGGTGGAGGAGAGTGAGATCATCTTTGACCTCCTGCGGGACTTTCAGGAGAACTTACAGGCCGAGAAATGCACGTTCAATGTCATGAAGAAGCTCTGCTTCCTCCTGCGGGCTGACCGCATGAGCCTGTTCATGTACAGGACCCGCAATGGCATTGCAGAGCTAGCCACCAGGCTCTTCAACGTCCACAAGGATGCCGTCCTAGAGGACTGCTTGGTGATGCCAGACTCCGAGATTGTCTTCCCTTTGGACATGGGTGTCGTGGGCCACGTCGCACACTCCAAAAAGATCGCCAATGTCCCCAACACAGAAGAG
Seq A exon
GATGAGCATTTCTGCGACTTCGTGGACAGCCTCACAGAATATCAGACCAAGAGCATCCTGGCATCCCCCATCATGAATGGGAAGGACGTGGTAGCCATAATTATGGCTGTGAATAAAATAGATGAACCCCACTTCACCAAGAGAGATGAAGAG
Seq C2 exon
ATTCTTCTCAAATACCTCAACTTTGTGAATCTGATCATGAAGGTATTCCACCTGAGTTACCTGCACAACTGTGAGACCCGGCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(56.7=53.8)
A:
PF0159021=GAF=FE(33.3=100)
C2:
PF0159021=GAF=PD(8.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCATTGCAGAGCTAGCC
R:
GGTCTCACAGTTGTGCAGGTA
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]