DreEX6084209 @ danRer10
Exon Skipping
Gene
ENSDARG00000074777 | ank1b
Description
ankyrin 1, erythrocytic b [Source:ZFIN;Acc:ZDB-GENE-091113-6]
Coordinates
chr21:21002440-21007617:-
Coord C1 exon
chr21:21007498-21007617
Coord A exon
chr21:21005011-21005095
Coord C2 exon
chr21:21002440-21002514
Length
85 bp
Sequences
Splice sites
3' ss Seq
GAATATTTGTTCTCTTCTAGGGG
3' ss Score
9.58
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTGAGAGATGCTAATAAGGAAGCCAGTGGGTTCCTGTCCTTCCTACGCAAGTCCACCAAGTATGAGGACACGCAGCACGTCCTGTGTAACCTCAACATCACCATGCCTCCCTGCGTCAAG
Seq A exon
GGGGTGGGTAGCGATGATCGGCGGAGGACGTTGACTCCTCTGGCCCTGAGGGAGAGGTACAGCGCCCTGAGTGAACCTGGCCTGG
Seq C2 exon
CCGCTGTTAATGCTATGGAGAGAACCGAGCTAAAGATCACAGTTATAGCAGAGCAGCTGGGACTGAGCTGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074777-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053117=Death=PU(17.1=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAATAAGGAAGCCAGTGGG
R:
AGTCCCAGCTGCTCTGCTATA
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]