GgaEX0004700 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2670000-2670650:-
Coord C1 exon
chr22:2670531-2670650
Coord A exon
chr22:2670363-2670411
Coord C2 exon
chr22:2670000-2670100
Length
49 bp
Sequences
Splice sites
3' ss Seq
GGTTTGTCCCCACTTTGCAGGGA
3' ss Score
8.07
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
GTCCGGGACAGCAGCCGGGAAGCCAGTGGCTCCCTGTCCTTCCTGCGCAAGGCCATGAAGTATGAGGACTTGCAGCATGTGCTCTGCCACCTCAACATCAGCATTCCACCCTGCACCAAG
Seq A exon
GGAAGCAGCACTGAGGAGCGAAGGAGGACACTGACACCTTTGTCTCTGC
Seq C2 exon
GCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAGGTGAGTCCACACCTGATGGATGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'39-38,'39-36,40-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.706 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCTCAACATCAGCAT
R:
TGAGCATCCATCAGGTGTGGA
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]