RnoEX6055950 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73765376-73766963:-
Coord C1 exon
chr16:73766844-73766963
Coord A exon
chr16:73765727-73765805
Coord C2 exon
chr16:73765376-73765450
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTTGTCTTCTTCAGGGC
3' ss Score
12.94
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
Exon sequences
Seq C1 exon
GTGAGGGACAGCAGCCGCGAGCCAGGAGGGTTCTTGTCGTTCCTGCGGAAGCCGATGAAATATGAAGACGCACAGCACATCCTCTGCCACTTGAATGTCACCATGCCCCCCTGTACCAAG
Seq A exon
GGCAGTGGAGCAGAAGACAGGAGAAGGACCCTGACGCCCTTGACTCTTCGCTATAGCATTCTCAGCGAGTCCCGGCTGG
Seq C2 exon
GTTTTACCAGTGACACAGACCGTGTTGAAATGAAGATGGCTGTCATCAGGGAGCACCTCGGCCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'46-46,'46-45,47-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.296 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGGTTCTTGTCGTTCCT
R:
CCAGCTGAGGCCGAGGTG
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]