DreEX6084365 @ danRer10
Exon Skipping
Gene
ENSDARG00000069748 | capn5b
Description
calpain 5b [Source:ZFIN;Acc:ZDB-GENE-091116-29]
Coordinates
chr21:22157642-22169969:+
Coord C1 exon
chr21:22157642-22157834
Coord A exon
chr21:22162419-22162612
Coord C2 exon
chr21:22169892-22169969
Length
194 bp
Sequences
Splice sites
3' ss Seq
GCTTTACATTTGGTATGCAGGCA
3' ss Score
4.68
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTCTATGGCTGTTATGAAGCACTGGATGGTGGGAACACGGCTGATGCTCTGGTGGATTTCACTGGTGGTGTGTCTGAACCGATGGACCTGCTGGAGGGTCAGTTCGCTCAGGATGAAACTGCCAGAAACCAGCTCTTCGAGAGGGTGCTTAAGGTTCATAATCGAGATGGCCTCATCAGCTGCTCCATCAGG
Seq A exon
GCAACCACAGTAGAGGACATGGAAGCACGACTGGACTGTGGATTAGTGAAAGGCCATGCTTACGCAGTGACCGACGTACGCAAGGTCCGTCTGGGACATGGCCTACTGGCTTATTTTAAGTCTGAAAAGCTGCACATGATCCGCATGAGGAACCCCTGGGGTGAGAAGGAGTGGAGTGGACCATGGAGTGACAG
Seq C2 exon
CTCAGAAGAGTGGAAGAAAGTGAGCAAGAGTGAGAGAGAGAAGCTGGGCGTCACTGTTCAGGATGATGGAGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069748-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.1=100)
A:
PF0064816=Peptidase_C2=FE(20.1=100)
C2:
PF0064816=Peptidase_C2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCACTGGATGGTGGGAAC
R:
ATCATCCTGAACAGTGACGCC
Band lengths:
244-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]