GgaEX0000720 @ galGal3
Exon Skipping
Gene
ENSGALG00000000750 | CAPN5
Description
NA
Coordinates
chr1:198214071-198215661:-
Coord C1 exon
chr1:198215469-198215661
Coord A exon
chr1:198214648-198214841
Coord C2 exon
chr1:198214071-198214148
Length
194 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTCCTCCTGCCCAGGCT
3' ss Score
7.99
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGTCAGGATGTTACGAGGCCCTGGATGGAGGCAACACAGCTGATGCTCTGGTAGACTTTACTGGTGGGGTCTCTGAACCTATCGACCTGACTGAAGGGGACTACACCACTGATGAAGCCAAACGAAACCTCCTCTTTGAGCGTGTGTTGAAAGTGCACAACCGTGGAGGCCTCATCAGCTGCTCCATCAAA
Seq A exon
GCTATGTCAGCAGCAGACATGGAGGCCCGCCTGGCCTGTGGGCTGGTGAAGGGCCATGCGTACGCTGTGACTGATGTGCGGAAGGTCCGCCTGGGCCACGGCCTGCTGTCTTTCTTCAAGTCAGAGAAGCTGGACATGATCCGCATGCGCAACCCATGGGGTGAACGAGAGTGGAACGGCCCTTGGAGTGATAC
Seq C2 exon
CTCTGAAGAGTGGCAGAAAGTGAGCAAAAGTGAAAGAGAGAAGATGGGAATGACAGTAGAAGATGATGGCGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000750-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.407
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.2=100)
A:
PF0064816=Peptidase_C2=FE(20.2=100)
C2:
PF0064816=Peptidase_C2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTACGAGGCCCTGGATG
R:
TCGCCATCATCTTCTACTGTCA
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]