RnoEX0016719 @ rn6
Exon Skipping
Gene
ENSRNOG00000014251 | Capn5
Description
calpain 5 [Source:RGD Symbol;Acc:620084]
Coordinates
chr1:163082890-163084707:-
Coord C1 exon
chr1:163084515-163084707
Coord A exon
chr1:163083401-163083594
Coord C2 exon
chr1:163082890-163082967
Length
194 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTGTTTGTTCTGCAGGCT
3' ss Score
11.26
5' ss Seq
CACGTGAGG
5' ss Score
5.78
Exon sequences
Seq C1 exon
GCTGGCAGGCTGTTACCAGGCCCTGGACGGAGGCAACACAGCCGATGCACTGGTGGATTTCACAGGCGGTGTTTCGGAACCCATCGACCTGACCGAGGGGGACTTGGCCACAGATGAGGCTAAGAGAAGCCAGCTCTTTGAACGTGTGTTGAAGGTGCACAGCAGAGGTGGGCTCATCAGTGCCTCCATCAAG
Seq A exon
GCTATGACAGCAGCTGACATGGAGACCCGTCTGGCCTGTGGTCTGGTGAAGGGCCATGCATATGCTGTCACCGATGTGCGCAAGGTGCGCCTGGGCCATGGCCTGCTGGCCTTCTTCAAGTCAGAGAAGCTGGACATGATCCGTCTGAGGAACCCCTGGGGCGAGCGGGAGTGGACCGGGCCCTGGAGTGACAC
Seq C2 exon
GTCAGAGGAATGGCAGAAAGTGAGCAAGAGTGAGAGGGAGAAAATGGGCGTGACCGTACAGGACGATGGTGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014251-'21-14,'21-13,22-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.185
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.1=100)
A:
PF0064816=Peptidase_C2=FE(20.1=100)
C2:
PF0064816=Peptidase_C2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCAGGCTGTTACCAG
R:
CGCCCATTTTCTCCCTCTCAC
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]