DreEX6084374 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22263839-22267367:+
Coord C1 exon
chr21:22263839-22263944
Coord A exon
chr21:22266993-22267106
Coord C2 exon
chr21:22267280-22267367
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTCCTTTTTTGTTTGCAGGCT
3' ss Score
9.81
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TAATGGGTCCAGAAAGTATCCTCCTCACCTTGTAGAAGTGGAGGCCATTCAGCACAAAACCACCCAGATCTTTCACAAAGTGTACTTTCCTGATGACACTGATGAG
Seq A exon
GCTTTTGAGGTTGAATCCAGTACAAAAGCCAAAGATTTCTGCCGAAACATCGCCGGCAGGATGATGCTTCATTCCTCTGAAGGTTTCAGCTTGTTTGTCAAAATTTCTGACAAG
Seq C2 exon
GTGATCAGTGTGCCAGAAGGAGATTTCTTCTTTGACTTTGTTCGACATCTGACAGACTGGATCAAAAAAGCCAGAGCTGTGAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
PF093795=FERM_N=FE(39.4=100)
C2:
PF093795=FERM_N=FE(30.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGGTCCAGAAAGTATCCTCCT
R:
CGTCTTTCACAGCTCTGGC
Band lengths:
194-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]