DreEX6087051 @ danRer10
Exon Skipping
Gene
ENSDARG00000053487 | osbp2
Description
oxysterol binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-091113-18]
Coordinates
chr10:7963781-7968658:-
Coord C1 exon
chr10:7968538-7968658
Coord A exon
chr10:7968193-7968296
Coord C2 exon
chr10:7963781-7963876
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTTTGCTCTCTGCAGGCA
3' ss Score
10.19
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATCAGTCATCATCCTCCAGCGGCGGCACATCACGTCATTTCACAGCGAGGCTGGACTCTGTGGCAGGAGATCACCATCGACAGCAAATTTCGTGGCAAATACATCTCCATCATGCCATTAG
Seq A exon
GCAACATTCACCTTAAGTTCCACACCAGCGGGAATCATTATGTGTGGAGCAAGGTGACCTCCACCGTGCACAATATTATCGTGGGCAAGCTATGGATTGATCAA
Seq C2 exon
TCTGGAGACATTATAATAGTGAACCACCGGAGCAAGGACACGTGCCACCTCAAATTCTCCCCTTACAGCTATTTTTCCAGAGATGTTCCCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053487-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.6=100),PF042659=TPK_B1_binding=PU(41.7=48.8)
A:
PF0123713=Oxysterol_BP=FE(9.0=100),PF042659=TPK_B1_binding=PD(56.2=77.1)
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCATCATCCTCCAGCGG
R:
GCGGGGAACATCTCTGGAAAA
Band lengths:
213-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]