HsaEX1026662 @ hg38
Exon Skipping
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr22:30893122-30893733:+
Coord C1 exon
chr22:30893122-30893242
Coord A exon
chr22:30893463-30893566
Coord C2 exon
chr22:30893638-30893733
Length
104 bp
Sequences
Splice sites
3' ss Seq
GACCTGTCCCCTGCCTCCAGGTG
3' ss Score
11.76
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTGAGCCACCACCCCCCCTCAGCTGCGCACTACGTGTTCTCCAAGCATGGCTGGAGCCTCTGGCAGGAGATCACCATCTCCAGCAAGTTCCGGGGAAAATACATCTCCATCATGCCGCTAG
Seq A exon
GTGCCATCCACTTAGAATTCCAGGCCAGTGGGAATCACTACGTGTGGAGGAAGAGCACCTCAACTGTTCACAACATCATCGTGGGCAAGCTCTGGATCGACCAG
Seq C2 exon
TCAGGGGACATCGAGATTGTGAACCATAAGACCAATGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTACTTCTCCAAAGAGGCAGCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792-'41-54,'41-52,42-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.5=100)
A:
PF0123713=Oxysterol_BP=PU(47.9=97.1)
C2:
PF0123713=Oxysterol_BP=PD(50.7=87.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAGCTGCGCACTAC
R:
CTTCCGGGCTGCCTCTTTG
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains