GgaEX6014402 @ galGal4
Exon Skipping
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10703581-10704298:-
Coord C1 exon
chr15:10704178-10704298
Coord A exon
chr15:10703900-10704003
Coord C2 exon
chr15:10703581-10703676
Length
104 bp
Sequences
Splice sites
3' ss Seq
GAGCCCAGGGCTCTCCACAGGTG
3' ss Score
2.33
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGAGCCACCACCCCCCAGCAGCTGCCCACCACGTCTTCTCCAAGCGAGGCTGGACGCTGTGGCAGGAGATCACCATCGCCAGCAAGTTCAGGGGCAAATACCTCTCCATCATGCCTCTGG
Seq A exon
GTGCCATCCACCTCGAGTTTCACTCCAGTGGGAATCACTATGTCTGGAGGAAAGTCACCTCCACCGTTCACAACATCATCGTGGGCAAGCTTTGGATCGACCAG
Seq C2 exon
TCTGGTGAAATAGAGATTGTTAACCATAAGTCAAAAGATAAATGCCAGCTGAAATTTACCCCCTACAGCTACTTCTCCAGGGATGTCCCCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'28-17,'28-16,29-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(10.6=100)
A:
PF0123713=Oxysterol_BP=FE(9.0=100)
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCACCACGTCTTCTC
R:
GGACATCCCTGGAGAAGTAGCT
Band lengths:
187-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]