DreEX6087255 @ danRer10
Exon Skipping
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10399856-10402538:+
Coord C1 exon
chr10:10399856-10399990
Coord A exon
chr10:10402050-10402254
Coord C2 exon
chr10:10402419-10402538
Length
205 bp
Sequences
Splice sites
3' ss Seq
GTTTGGTTGTTCTGTTTCAGGGT
3' ss Score
10.13
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
TATTCAGACACAGACAACATCCTGACCAATCCTGACACGCTACACCTTCTTATGGCAGAGAATAAATCAGTCATTGCCCCAATGCTGGACTCACAGTCGGCTTACTCCAACTACTGGTGCGGCATCACTCCGCAG
Seq A exon
GGTTACTATCGGCGCACAGCAGAGTATTTTCCCACGAAGCAGCGTCAGCGTCTGGGCTGTTATCCTGTGCCGATGGTCCACTCCACTGTCCTGCTGGACCTGCGCAAACAGGGCACCCGGAAAGTGTCATTTCACCCCCCTCACAAAGACTACTCCTGGCCCTTTGACGACATCATCGTTTTCGCATTCTCCTGCAGAGTATCAG
Seq C2 exon
AGGTTCAGATGTATCTGTGCAACAAGGAGCGTTATGGGTATCTGAACGTGCCTGCAAAGCCTCATCAGACTGTGGAGGACGATCGCATCAATTTTGTTCACCTTTACCTGGAATCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACACAGACAACATCCTGAC
R:
TCAGAGATTCCAGGTAAAGGTGA
Band lengths:
252-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]