RnoEX0020276 @ rn6
Exon Skipping
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8435459-8438275:+
Coord C1 exon
chr3:8435459-8435593
Coord A exon
chr3:8435710-8435914
Coord C2 exon
chr3:8438156-8438275
Length
205 bp
Sequences
Splice sites
3' ss Seq
TAAAACATTCTTTCCTTTAGGGC
3' ss Score
9.96
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
TTCGCAGACACAGACAACATTCTTACCAATAACCAAACACTGAGGCTTCTCATAGATCGGCAATTGCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
Seq A exon
GGCTACTATCGCCGTACAGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTTCCAATGGTCCACTCCACCTTCCTGGTATCCTTGCAGACGGAGGAAACAGCCCGACTTGCCTTCTACCCACCTCATCCCAACTATACTTGGCCTTTTGATGACATCATTGTCTTCGCCTATGCCTGCCAGGCTGCTG
Seq C2 exon
GGGTCTCAGTGCACGTGTGCAACGACCATCGTTACGGATACATGAATGTAGGCGTGAAACCCCACCAGGGGCTGGAGGAAGAGAAGACCAACTTTATCCACCTGATTTTGGAAGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604-'10-10,'10-8,11-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(21.0=37.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGACACAGACAACATTCT
R:
AGTGCTTCCAAAATCAGGTGGA
Band lengths:
252-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]