MmuEX6100111 @ mm10
Exon Skipping
Gene
ENSMUSG00000039787 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
Coordinates
chr2:29872563-29875724:+
Coord C1 exon
chr2:29872563-29872697
Coord A exon
chr2:29872808-29873012
Coord C2 exon
chr2:29875605-29875724
Length
205 bp
Sequences
Splice sites
3' ss Seq
CAAAACATTCTCTCTTCCAGGGC
3' ss Score
9.6
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
TTCGCAGATACAGACAACATTCTTACTAACAACCAGACACTGAAGCTTCTCATAGATCGGCAGCTGCCGGTGGTGGCCCCGATGCTGGACTCTCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
Seq A exon
GGCTACTATCGCCGCACGGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTCCCTATGGTCCACTCTACCTTCCTGCTGTCCTTGCAGACTGAGGAAACAGCCCGGCTTGCCTTCTACCCTCCTCATCCCAACTACAGTTGGCCTTTTGATGACATCATTGTCTTTGCCTATGCCTGCCAGGCTGCTG
Seq C2 exon
GGGTCTCGATGCATGTGTGCAATGACCATCGTTACGGGTACATGAATGTGGTAGTGAAGCCCCACCAGAGCCTGGAGGAAGAGAAGACGAACTTTATCCACCTCATTTTGGAAGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039787-'13-14,'13-10,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGATACAGACAACATTCT
R:
AGTGCTTCCAAAATGAGGTGGA
Band lengths:
252-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types