DreEX6088153 @ danRer10
Exon Skipping
Gene
ENSDARG00000056985 | tpte
Description
transmembrane phosphatase with tensin homology [Source:ZFIN;Acc:ZDB-GENE-030131-5503]
Coordinates
chr10:24735621-24737886:+
Coord C1 exon
chr10:24735621-24735718
Coord A exon
chr10:24735805-24735900
Coord C2 exon
chr10:24737816-24737886
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTCTGTCTCTCAGGTG
3' ss Score
12.05
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGTGGGGAAGGGCAACGGCAGTGACCTGAAACTGAAGATCATAGTGAAGCACGAGCTTGTTTTCCAGTGTGTTTGTGCCAAACAGCACAACTGTACA
Seq A exon
GTGTTTCCTGACACTGGTAGCAATGCGGTGGTCATCAGTTTACAGGACGGGCCTATAGTGACTGGAGATGTGAAGGTCATGTTTGAGTCCAGTGCT
Seq C2 exon
GGTTTGCCGAAGGGTTATGAGGACTGTCCCTTCTATTTCTGGTTCAACACCTCATTTGTGGAGAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056985-'20-24,'20-22,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(23.2=100)
A:
PF104094=PTEN_C2=FE(22.5=100)
C2:
PF104094=PTEN_C2=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGGAAGGGCAACG
R:
TGTAGTTCTCCACAAATGAGGTGT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]