MmuEX6034799 @ mm9
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23469867-23480053:+
Coord C1 exon
chr8:23469867-23469958
Coord A exon
chr8:23476386-23476478
Coord C2 exon
chr8:23479983-23480053
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTTATATGTTTGTCCACAGATA
3' ss Score
11.47
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCGTTGGAAAAGGCGACGGGAGTGACCTGGAAGTACAAATCATAATGTGGCAGGAGACTGTTTTTTCCTTTTGTAATTCCAGGAATTGTATG
Seq A exon
ATATTTCATGACCCTGAAACAGACAGAGCAATAATCAATGTGTTCCATTGCCCGGCTCTATACGATGATGTGAAAGTGAAATTTCTCTCTCCG
Seq C2 exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTAAAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'26-29,'26-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.2=100)
A:
PF104094=PTEN_C2=FE(22.2=100)
C2:
PF104094=PTEN_C2=FE(17.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTGGAAAAGGCGACGG
R:
TGTATGAAACCAAAAGAAAAAGGGGC
Band lengths:
143-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: