HsaEX1032626 @ hg38
Exon Skipping
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52189639-52227096:-
Coord C1 exon
chr13:52227005-52227096
Coord A exon
chr13:52223239-52223331
Coord C2 exon
chr13:52189639-52189914
Length
93 bp
Sequences
Splice sites
3' ss Seq
AATTCCATGTTCATTCACAGGTA
3' ss Score
7.97
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTGTTGGAACAGGCGATGGATATGATCTAAAAGTCCAAATAGTAATGAAGAAAAAGATTGTCTTTTCCTGTACTTCCTTAAAGAATTGTCGG
Seq A exon
GTATTTCATGACACTGAAACAGACAGGGTAATAACTGATGTGTTCAACTGTCCACCTCTGTATGATGATGTGAAAGTGCAAGCTTCCTCTTCA
Seq C2 exon
GACAAAAAATAATATCCAAAGATATTTTGGCACTAACAGCGCTATCTGTAGCAAGAAAGTTGAGCAGTGTGAACTGTTGAGACTTCCAAGAAGACTTCAGAGAACCAAGACAGTGTAAAGGAAAACAGGAAAAAAGACTTGTTAGACATTATTAAGGGCACGAAAGTTGAATTGAGCACAGTAAATGTACAAACAACAAAGCCACCCAACAGAAGTCCACTTAAAAGCTACAACTGGCCCGCCTCAAAGAGCTACAGAGCATGCTCCAAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-'23-29,'23-22,25-29
Average complexity
C2
Mappability confidence:
93%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTGGAACAGGCGATGGAT
R:
TGGAAGTCTCAACAGTTCACACT
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains