DreEX6089862 @ danRer10
Exon Skipping
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:45029727-45032245:+
Coord C1 exon
chr10:45029727-45029998
Coord A exon
chr10:45031485-45031543
Coord C2 exon
chr10:45032054-45032245
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTGTTTTCGCAGTTT
3' ss Score
9.09
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AAACAACAACATCGACTACATGGAGATCCGTCTGTGGATCGGTTTGCACTCCTGCCTGCAGTGTCTGATTCTAGTGGCCACAGATGCGAGTTATATCATCAAATATATGACACGCTTTACAGAGGAGGGTTTCTCCAGCCTCATCTCCTTCATCTTCATCTCTGACGCCCTCAAGAAGATGATGAGCACCTTCAGCTATTACCCCATCAGCCCAGACTTTAAGCCCGACCTCATCATTAGCTACAGGTGTGACTGCCAGCTTCCGGACCAGG
Seq A exon
TTTCTCCACTGAACAGCACGTCTCCGCTCGCTCTAGAGAACATGTCGGACTACTCGATG
Seq C2 exon
TTCAACTTCTCTGCTCTGGACTGGACTCAGATCAGTAAGAAGGAGTGTCTGAGGCTCGGCGGCTCGCTGGTGGGCAAATCCTGCAAATATGTGCCGGATCTGGCCATGCTGTCCTTCATCCTGTTCTTCGGCACTTACTCCATGACCATCTCGCTCAAGAAGTTCAAGTCTAGCAGATATTTCCCTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387-'18-19,'18-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.5=100)
A:
PF0095516=HCO3_cotransp=FE(3.9=100)
C2:
PF0095516=HCO3_cotransp=FE(12.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTACAGGTGTGACTGCCA
R:
GGCCAGATCCGGCACATATTT
Band lengths:
140-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]