GgaEX7011582 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2844790-2848281:-
Coord C1 exon
chr22:2848010-2848281
Coord A exon
chr22:2845280-2845341
Coord C2 exon
chr22:2844790-2844990
Length
62 bp
Sequences
Splice sites
3' ss Seq
AACAAACTTCTTTCCTGCAGCCA
3' ss Score
8.25
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AGGTAACGGCATCGACTACATGGAGTTCCGCCTCTGGATTGGCTTGCACTCTGCTCTACAGTGCCTTATCCTGGTGGCTACTGACGCCAGCTTCATTATAAAGTACATCACCCGCTTCACAGAGGAAGGCTTCTCCACCCTCATCAGCTTCATCTTCATCTACGATGCCATCAAGAAGATGATAGGGGCCTTTAAGTACTACCCCATCAATTCGGACTTCAAGCCAGACTATGTGACCATGTACAAATGCGAGTGCATTGCTCCTGACCCAG
Seq A exon
CCAACATGACATTGTTCGATGCTTCAGTTCCAGTAGCACCAAACACCACTAACGCGTCTCTG
Seq C2 exon
TACAATGCTATTAACCTCACAGCTCTGGATTGGACTCAGCTGAGTAAGAAGGAGTGTCTCAAGTACGGCGGCAGCTTAGTGGGGAAATCCTGTAAGTTCGTGCCCGATTTGGCCCTCATGTCCTTCATCCTCTTCTTTGGGACCTACTCCATGACGCTCACCTTGAAGAAGTTCAAATTCAGCCGCTACTTCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'22-23,'22-21,23-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(20.3=100)
A:
PF0095516=HCO3_cotransp=FE(4.5=100)
C2:
PF0095516=HCO3_cotransp=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCATTGCTCCTGACCC
R:
AAGGACATGAGGGCCAAATCG
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]