DreEX6090015 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:208635-209599:-
Coord C1 exon
chr11:209411-209599
Coord A exon
chr11:209037-209105
Coord C2 exon
chr11:208635-208742
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTACCTCTTTCTCTATCTAGGGA
3' ss Score
11.42
5' ss Seq
TACGTACGC
5' ss Score
3.87
Exon sequences
Seq C1 exon
ATATTCCTCTGGATGGGGAATGAGGCCAATGATGTGGAGCGGCGCGAGTGTGTGCCTACCTGTGCCGAGTACCTGCGGACACACCCCGGCTCCAGAGACCCCGACACCCCCATTGTCATCATCAAGCAGGGCTTCGAGCCACCCACATTCACCGGCTGGTTCACTGCCTGGGACCCTAGCAAGTGGAGT
Seq A exon
GGAGGAAAAACGTACGAGCAGCTGAAGCAGGAGCTGGGAGATGTGACGCTGCCGAGCACCATTCAATAC
Seq C2 exon
ATCTCCGATGCTCCAGAGAATAACATCATCTCTGAGTATCCAGCGGCGCTGCTGGTGAACAAGAGCACTGAAGATCTGCCCAAAGATGTGGATCCAGCACAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATCAAGCAGGGCTTCGA
R:
TCTCTCTGTGCTGGATCCACA
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]