RnoEX6031798 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70305849-70308148:+
Coord C1 exon
chr7:70305849-70306037
Coord A exon
chr7:70306516-70306584
Coord C2 exon
chr7:70308023-70308148
Length
69 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTTTTCTTCCTAGGAA
3' ss Score
9.81
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGTTCCTGTGGATAGGAGCGGAGGCCAATGCCACAGAGAAGGAGGGGGCCCTCTCGACTGCTCAGGAGTACCTGGTAACACACCCCAGTGGCCGAGACCCCGACACACCGATCCTGATCATCAAACAGGGCTTTGAGCCCCCCACTTTCACAGGCTGGTTCCTGGCATGGGACCCTCACATTTGGAGT
Seq A exon
GAAGGAAAATCATATGAGCAGTTAAAGAACGAGCTGGGAGATGCCACTGCTATCGTGCGAATCACCACG
Seq C2 exon
GACATGAAGAACGCAACCCTCTCCCTGAATTCTAGTGAAAGTGGGCCAAAGTACTACCCTGTGGAGGTTCTGCTGAAAAGTCAGGACCAGGAGCTGCCTGAGGATGTGGACCCCACCAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'22-20,'22-19,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGACTGCTCAGGAGTACC
R:
GAATTCAGGGAGAGGGTTGCG
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]