DreEX6091836 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24972523-24974073:-
Coord C1 exon
chr11:24973930-24974073
Coord A exon
chr11:24972738-24972894
Coord C2 exon
chr11:24972523-24972550
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTGTCATCTCCTCATGGCAGACG
3' ss Score
7.5
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
TGCTTAACTGTCAAGGAAGATGACATTCAACAGATGAACCCGCCAAAGTTTGACCTGATAGAGGACATGGCCATGCTCACACACCTGAACGAAGCGTCGGTGCTCTTCAATCTGCGGAGGCGATACAGCAGTTGGATGATTTAT
Seq A exon
ACGTACTCTGGGCTCTTCTGTGTGACCGTGAACCCATATAAATGGCTCCCCGTCTACACTGCCCCTGTAGTGGCTGCCTACAAAGGCAAACGCCGCTCGGAGGCTCCACCTCACATCTACTCCATTGCTGACAATGCCTACAATGACATGTTACGCA
Seq C2 exon
ATCGTGAGAATCAGTCCATGCTAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
PF0006316=Myosin_head=FE(7.6=100)
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTAACTGTCAAGGAAGATGAC
R:
TGATTAGCATGGACTGATTCTCACG
Band lengths:
171-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]