RnoEX0057053 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151128568-151129603:+
Coord C1 exon
chr3:151128568-151128711
Coord A exon
chr3:151129160-151129316
Coord C2 exon
chr3:151129576-151129603
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATTGTGAACTCTCTCCTCAGACA
3' ss Score
8.28
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTGCTGACAGTGCGTGAAACGGAAATGCAGCCCATGAACCCACCCCGCTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCTGCAGTGCTGCACAACCTGCGCCAGCGTTATGCTCGCTGGATGATCTAC
Seq A exon
ACATACTCGGGCCTCTTCTGTGTCACCATTAACCCATACAAATGGCTCCCGGTCTACACAGCTACTGTGGTGGCCGCCTACAAGGGCAAGCGCCGCTCGGAGGCCCCGCCTCATATATATGCAGTGGCAGATAATGCCTACAATGACATGCTCCGCA
Seq C2 exon
ACAGAGAGAACCAGTCCATGCTGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'3-4,'3-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
PF0006316=Myosin_head=FE(7.6=100)
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGACAGTGCGTGAAAC
R:
GTGATCAGCATGGACTGGTTCT
Band lengths:
172-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]