GgaEX6022712 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2609522-2610055:-
Coord C1 exon
chr20:2609912-2610055
Coord A exon
chr20:2609652-2609808
Coord C2 exon
chr20:2609522-2609549
Length
157 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTTCCCACCCACAGACC
3' ss Score
10.98
5' ss Seq
GCAGTATGG
5' ss Score
1.15
Exon sequences
Seq C1 exon
ACGCGGGTGGTGAAGGAAGATGAGCTGCAGGCCATGAACCCCCCCAAGTTCGACATGATTGAAGACATGGCCATGCTGACGCATCTCAACGAGGCCTCCGTGCTCTACAACCTCAAGCGCCGCTACTCCCACTGGATGATCTAT
Seq A exon
ACCTATTCGGGGCTCTTCTGCGTCACCATCAACCCCTACAAATGGCTGCCGGTCTACACTGCGCCCGTGGTGGCGGCCTACAAGGGGAAGCGGCGCTCCGAGGCACCGCCACACATCTACTCCATCGCTGACAACGCCTACAACGACATGCTGCGCA
Seq C2 exon
ATCGTGAGAACCAGTCCATGCTCATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
PF0006316=Myosin_head=FE(7.5=100)
C2:
PF0006316=Myosin_head=FE(1.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTGGTGAAGGAAGATG
R:
GTGATGAGCATGGACTGGTTCT
Band lengths:
170-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]