DreEX6092751 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35670212-35672188:-
Coord C1 exon
chr11:35672047-35672188
Coord A exon
chr11:35671901-35671952
Coord C2 exon
chr11:35670212-35670377
Length
52 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTGTTTGTTTCACAGCTC
3' ss Score
10.65
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
TTCATTCTGAATGTTCGGCTGGACTACAGGATCTCCTGCTTGCTGTGCATCTTCAAACGAGAGTTTGACGAAAGCAACACACAAACAGATACAGCACCTGCTCCAAATGCAGACGGCCCCAACAGTATCCCAAATATTCCAG
Seq A exon
CTCTGGACTTTGAGAACATTGAAGAGCAAGCAGAAGGAATTTTTGGTGGAAG
Seq C2 exon
TGAGGAGAACACACCTCTGGATCTTGATGACCACGGTGGCAGAACGTTTCTGAGGGTTTTGCTTCATCTCACCATGCATGACTATCCACCGCTTGTGTCCGGAGCGCTTCACCTGCTCTTTAGACACTTCAGCCAGAGACAAGAAGTGCTCATGGCTTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'27-26,'27-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.444 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTTGCTGTGCATCTTC
R:
CCACCGTGGTCATCAAGATCC
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]