MmuEX6006011 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108341825-108344064:+
Coord C1 exon
chr6:108341825-108341963
Coord A exon
chr6:108342525-108342579
Coord C2 exon
chr6:108343899-108344064
Length
55 bp
Sequences
Splice sites
3' ss Seq
CATGTACTCTCACTTTTCAGGTG
3' ss Score
12.03
5' ss Seq
AAGGAAAGT
5' ss Score
2.81
Exon sequences
Seq C1 exon
TTTATTTTGAATGTGAGATTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGAGAGTTTGATGAAAGCAATTCCCAGTCATCAGAAACATCCTCCGGAAACAGCAGCCAGGAAGGGCCAAGTAATGTGCCAG
Seq A exon
GTGCTCTTGACTTTGAACACATTGAAGAACAAGCGGAAGGCATCTTTGGAGGAAG
Seq C2 exon
TGAGGAGAACACACCTTTGGACCTGGATGACCATGGTGGCAGAACCTTCCTCAGGGTCCTGCTCCACTTGACAATGCATGACTACCCACCCCTGGTGTCTGGGGCCCTGCAGCTCCTCTTTCGGCACTTCAGCCAGAGGCAGGAGGTCCTTCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.369 C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTCCTGCCTCCTGTGTA
R:
TGGTCATCCAGGTCCAAAGGT
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: