GgaEX0012005 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18446603-18449039:+
Coord C1 exon
chr12:18446603-18446741
Coord A exon
chr12:18447575-18447629
Coord C2 exon
chr12:18448874-18449039
Length
55 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTCTTATGTTCCTAGGAG
3' ss Score
9.3
5' ss Seq
AAGGAAAGT
5' ss Score
2.81
Exon sequences
Seq C1 exon
TTCATTTTGAATGTGAGATTGGACTACAGAATCTCCTGCCTACTTTGTATATTTAAACACGAATTTGATGAAAGCAACGCCCAGATGTCTGAGTCACCCACTGGAAGCAGTAGTCAAGAAATGCCAGCAAATGTACCAG
Seq A exon
GAGCCCTAGACTTTGAACATATTGAAGAGCAAGCTGAAGGAATCTTTGGTGGAAG
Seq C2 exon
TGAGGAGAACACTCCGTTGGATCTGGATGATCATGGTGGCAGAACATTCCTCAGAGTTCTGCTGCATTTAACGATGCATGATTACCCTCCCCTGGTCTCCGGAGCACTCCAGCTTCTCTTCCGGCACTTCAGTCAAAGACAGGAAGTTCTTCAGGCTTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'31-39,'31-38,32-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.316 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACTGGAAGCAGTAGTCA
R:
GGAGACCAGGGGAGGGTAATC
Band lengths:
144-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]