RnoEX6014536 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140425045-140427431:+
Coord C1 exon
chr4:140425045-140425183
Coord A exon
chr4:140425780-140425834
Coord C2 exon
chr4:140427266-140427431
Length
55 bp
Sequences
Splice sites
3' ss Seq
TATGTCCTCTCACCTTTCAGGTG
3' ss Score
13.45
5' ss Seq
AAGGAAAGT
5' ss Score
2.81
Exon sequences
Seq C1 exon
TTTATTTTGAATGTGAGATTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGGGAGTTTGATGAAAGCAATTCCCAGTCATCAGAAACATCCTCCGGAAACAGCAGCCAAGAAGGGCCAAGTAATGTACCAG
Seq A exon
GTGCTCTTGACTTTGAACACATTGAAGAGCAAGCAGAAGGCATCTTTGGGGGAAG
Seq C2 exon
TGAGGAGAACACACCTCTGGACTTGGATGATCATGGTGGCAGAACCTTCCTCAGGGTCCTGCTCCACTTGACAATGCATGATTACCCACCCCTGGTGTCTGGGGCCCTGCAGCTCCTCTTCCGGCATTTCAGCCAGAGGCAGGAGGTCCTTCAGGCCTTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'42-41,'42-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.420 C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGAGTTTGATGAAAGCA
R:
GAGGAAGGTTCTGCCACCATG
Band lengths:
136-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]