DreEX6093205 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41130819-41132142:-
Coord C1 exon
chr11:41132011-41132142
Coord A exon
chr11:41131037-41131165
Coord C2 exon
chr11:41130819-41130950
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCCATGTGTGTGTCTCCAGCAT
3' ss Score
8.28
5' ss Seq
AGGGTGCGG
5' ss Score
5.1
Exon sequences
Seq C1 exon
AGTGTCCTGAGGGCCGCTGGGGTCTGGGCTGTCAGGAATGGTGTCCGGTGTGCGAGAACGGAGGCCGCTGTGACCGGCGTAACGGCACATGTGTGTGTTCTCCTGGATTCATCGGCAGATTGTGTCAGAACT
Seq A exon
CATGTCCTGCGGGTCGCTTCGGTGTGGGCTGTCAGCTCAGATGTGTGTGTGATCTCGGAGTTCGCTGTAATCCTGTAAGCGGACGCTGCTCGTGTCCTCCAGGCTGGACGGGACACAACTGCAGGAAGG
Seq C2 exon
TGTGTGACGCGGGCCGCTGGGGTCTGGACTGTGAGAGTGTATGTGACTGTCGTAATGCTGACGGTGTGTGTGATGCTCAGACTGGACGCTGTCATTGTGAGGCCGGATTTACTGGAGCACGATGTGACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'23-21,'23-20,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=28.9)
A:
PF126612=hEGF=WD(100=29.5)
C2:
PF126612=hEGF=WD(100=28.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTGGGCTGTCAGGAAT
R:
TGGTCACATCGTGCTCCAGTA
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]