GgaEX6023691 @ galGal4
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1020743-1021541:+
Coord C1 exon
chr21:1020743-1020874
Coord A exon
chr21:1021175-1021303
Coord C2 exon
chr21:1021410-1021541
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCATGTCCCTGCATCGCAGTGT
3' ss Score
6.62
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
CCTGCCCAGAGGGTCGCTGGGGCCTCGGCTGCCAGGAGCTGTGTCCTGAGTGTGCCAACAACGGCAGCTGTGACCCCGCCACGGGAGCGTGCGTGTGCCCACCGGGCTTCACTGGCAGCCGCTGCCAGGATG
Seq A exon
TGTGCCCACCCGGCTGGTTTGGCCAGGACTGCCAGCAGAGCTGCAGCTGTGGGAATGAGGGCCATTGCCACCCTGTGACGGGGACGTGCAGCTGCGCACCCGGCTGGACAGGTCACGACTGCCGGAGAG
Seq C2 exon
GCTGTGCTGTGGGGCGTTGGGGTCCGGGCTGTGCCAACGTCTGCGAGTGCAGCAGCAGCACCGGGAGCTGCGATGCGGTGACGGGGCAGTGCGCCTGCGATGCCGGCTACACGGGCAGCCGCTGCGAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'23-27,'23-25,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=28.9)
A:
PF126612=hEGF=WD(100=29.5)
C2:
PF0005319=Laminin_EGF=PU(63.8=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCAGAGGGTCGCTG
R:
GTGTAGCCGGCATCGCAG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]