BtaEX6069271 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50795687-50796263:+
Coord C1 exon
chr16:50795687-50795818
Coord A exon
chr16:50795912-50796040
Coord C2 exon
chr16:50796132-50796263
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTCTCTGCCCACAGCCT
3' ss Score
9.1
5' ss Seq
GAGGTAGCG
5' ss Score
5.65
Exon sequences
Seq C1 exon
ATTGTCCCGAGGGCCGCTGGGGGCTTGGCTGCCAGGAGATCTGCCCGCCGTGTGAGCACGGTGCCGCCTGTGTGCCGGAGACTGGAGCCTGCCTGTGCCGCCCCGGCTTCATGGGCAGCCGCTGCCAGGATG
Seq A exon
CCTGCCCTGCTGGCTGGTTTGGACCTGGCTGCCAGACGCAGTGCTCCTGTGCCAACGATGGGCTCTGCCACCCAGTGACCGGCCGGTGCAGCTGCGCCCCTGGGTGGACTGGCCTCAGCTGCCAGAGAG
Seq C2 exon
CCTGTGACAGCGGCCACTGGGGCCCCGACTGCAGCTTCACCTGCAACTGCAGTGCAGGCCACGGGGGCTGTGACGCCGTCAGCGGCCTGTGTGTGTGTGAAGCCGGCTACGTGGGCCCGCGGTGTGAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(70.2=75.0)
C2:
PF0005319=Laminin_EGF=PD(27.7=28.9),PF0005319=Laminin_EGF=PU(63.8=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCTGCCAGGAGATCTG
R:
GTAGCCGGCTTCACACACAC
Band lengths:
219-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]