GgaEX6023691 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:992329-993075:+
Coord C1 exon
chr21:992329-992371
Coord A exon
chr21:992790-992837
Coord C2 exon
chr21:992944-993075
Length
48 bp
Sequences
Splice sites
3' ss Seq
GGCTATGGGNNNNNNNNNNGGGA
3' ss Score
0
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AGCTGCAGCTGTGGGAATGAGGGCCATTGCCACCCTGTGACGG
Seq A exon
GGACGTGCAGCTGCGCACCCGGCTGGACAGGTCACGACTGCCGGAGAG
Seq C2 exon
GCTGTGCTGTGGGGCGTTGGGGTCCGGGCTGTGCCAACGTCTGCGAGTGCAGCAGCAGCACCGGGAGCTGCGATGCGGTGACGGGGCAGTGCGCCTGCGATGCCGGCTACACGGGCAGCCGCTGCGAGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'16-18,'16-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=76.5)
A:
PF0005319=Laminin_EGF=PU(63.8=66.7)
C2:
PF0005319=Laminin_EGF=PU(63.8=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGAATGAGGGCCATTG
R:
GTGTAGCCGGCATCGCAG
Band lengths:
147-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]