DreEX6095964 @ danRer10
Exon Skipping
Gene
ENSDARG00000056888 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr24:33745960-33761716:+
Coord C1 exon
chr24:33745960-33746177
Coord A exon
chr24:33760987-33761298
Coord C2 exon
chr24:33761627-33761716
Length
312 bp
Sequences
Splice sites
3' ss Seq
AAAGGTATATCATTTCACAGGGA
3' ss Score
4.98
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GTATGATGACCCTTGGTCCCAGTGGAACAGGAAAAACCACGTGTATCCACACGTTAATGAAAGCCATGACAGACTGTGGAAATCCTCACAAGGAGATGAGGATGAATCCCAAGGCCATCACTGCCTCCCAGATGTTTGGCACATTGGACGTGGCCACAAATGACTGGACAGATGGTATCTTCTCCACACTCTGGCGGAAAACTCTAAAATCCAAGAAG
Seq A exon
GGAGAGCACATATGGATTGTTCTCGATGGTCCAGTTGATGCCATCTGGATCGAAAATCTCAACTCTGTCTTAGACGACAACAAGACCCTCACCCTGGCCAATGGAGACCGAATACCAATGGCTCCCAACTGCAAGGTGGTATTTGAGCCTCACAACATTGACAATGCGTCTCCTGCCACCGTGTCCCGCAACGGAATGGTCTTCATGAGCTCCTCTGTTTTGGACTGGCAACCCATACTGCAGGCCTGGCTTAAAAAGATCCCGCCAATGCAGGCTGATGTGCTGCTGGCCGCCTTCAACTCGATCTATCAG
Seq C2 exon
GATTTGATGAATTTTGTCTTCACTGCCGTGTCCCCCAAAATGCAGCTGCTTGAATGCATGTACATAAAGCAGACCATTGATTTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056888-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(52.6=98.6)
A:
PF077289=AAA_5=PD(46.0=60.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTTGGTCCCAGTGGAA
R:
AAATCAATGGTCTGCTTTATGTACA
Band lengths:
294-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]