GgaEX6020911 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:91152949-91158609:-
Coord C1 exon
chr2:91158392-91158609
Coord A exon
chr2:91157226-91157537
Coord C2 exon
chr2:91152949-91153038
Length
312 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGCCTCTTTCTTCAGGGT
3' ss Score
11.13
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTATGATGACTCTAGGTCCAACTGGTGCAGGAAAGACCAAATGCATTAATATTTTGATGAAAGCAATGACAGATTGTGGTGCTCCTCATAAAGAGATGAGAATGAACCCAAAGGCAATCACAGCTTCCCAGATGTTTGGTACCCTTGATGTTGCCACAAATGATTGGACAGATGGCATTTTCTCTACATTATGGAGAAAAACTTTAAAAGTAAAGAAG
Seq A exon
GGTGAGCATATTTGGATAGTTTTGGATGGTCCTGTTGATGCGATATGGATTGAAAACTTGAACTCTGTTCTGGACGATAATAAGACCCTGACTTTGGCCAATGGAGATCGTATTCCGATGTCTCCCACTTGCAAAATTATTTTTGAACCACACAACATTGACAATGCTTCCCCGGCAACAGTTTCTCGTAATGGGATGGTCTTCATGAGTTCTTCAGTGTTAGATTGGAAGCCTATTTTAATGGCTTGGCTGCAAACACTGCCTGCTACATACTCCGATGTTCTTTGGAATTGCTTTAGTACTGTATTTCAG
Seq C2 exon
GATATGATCAATTTTGTTTTCTCTGCTGTGACACCAAAAATGGCGGTTTTAGAATGTATGTACATCAAACAAGCTATTGACCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013268-'57-62,'57-61,58-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(52.6=98.6)
A:
PF077289=AAA_5=PD(46.0=60.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTAGGTCCAACTGGTGC
R:
CTGTAGAAGGTCAATAGCTTGTTTGA
Band lengths:
302-614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]