GgaEX6020911 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHE5]
Coordinates
chr2:88841343-88846991:-
Coord C1 exon
chr2:88846774-88846991
Coord A exon
chr2:88845610-88845921
Coord C2 exon
chr2:88841343-88841432
Length
312 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGCCTCTTTCTTCAGGGT
3' ss Score
11.13
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTATGATGACTCTAGGTCCAACTGGTGCAGGAAAGACCAAATGCATTAATATTTTGATGAAAGCAATGACAGATTGTGGTGCTCCTCATAAAGAGATGAGAATGAACCCAAAGGCAATCACAGCTTCCCAGATGTTTGGTACCCTTGATGTTGCCACAAATGATTGGACAGATGGCATTTTCTCTACATTATGGAGAAAAACTTTAAAAGTAAAGAAG
Seq A exon
GGTGAGCATATTTGGATAGTTTTGGATGGTCCTGTTGATGCGATATGGATTGAAAACTTGAACTCTGTTCTGGACGATAATAAGACCCTGACTTTGGCCAATGGAGATCGTATTCCGATGTCTCCCACTTGCAAAATTATTTTTGAACCACACAACATTGACAATGCTTCCCCGGCAACAGTTTCTCGTAATGGGATGGTCTTCATGAGTTCTTCAGTGTTAGATTGGAAGCCTATTTTAATGGCTTGGCTGCAAACACTGCCTGCTACATACTCCGATGTTCTTTGGAATTGCTTTAGTACTGTATTTCAG
Seq C2 exon
GATATGATCAATTTTGTTTTCTCTGCTGTGACACCAAAAATGGCGGTTTTAGAATGTATGTACATCAAACAAGCTATTGACCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013268-'56-59,'56-58,57-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(52.6=98.6)
A:
PF077289=AAA_5=PD(46.0=60.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTAGGTCCAACTGGTGC
R:
CTGTAGAAGGTCAATAGCTTGTTTGA
Band lengths:
302-614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]