DreEX6096492 @ danRer10
Exon Skipping
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39593998-39596582:+
Coord C1 exon
chr24:39593998-39594121
Coord A exon
chr24:39594302-39594458
Coord C2 exon
chr24:39596439-39596582
Length
157 bp
Sequences
Splice sites
3' ss Seq
GATTAATGCTTCTGTTGTAGGTT
3' ss Score
8.23
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GACGATTTACACGTCACCTAAACATCTTATCTATTGACACATTTGATGATGAGACTCTGAGTAACATCTTCACATCCATCACCGACTGGCACTTCAGCAATGGGTTCGATGCCTCTTTCTACAG
Seq A exon
GTTGGGTAAAATCATGGTCCAAGCTACTATGGCAGTGTATAAGGATGCAATCGAGAGTTTCCTCCCAACACCATCTAAATCTCATTATATTTTCAATCTGCGAGATTTTGCAAGGGTAATCAGGGGAGTAATGCTCTGTCCATCAACACACATGCAG
Seq C2 exon
GAAGGTGATAAAGTCATTCGGTTGTGGATCCATGAGGTGTATCGTGTGTTTTATGATCGACTGGTTGATAATGATGACAGAGGCAAATTTTTTAACATCGTCAAAGAGAGGACATCAGCGTATTTCAAGCTAAGCCTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468-'38-40,'38-39,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.2=100)
A:
PF127752=AAA_7=FE(19.3=100)
C2:
PF127752=AAA_7=PD(4.1=22.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTTACACGTCACCTAAACA
R:
CGCTGATGTCCTCTCTTTGACG
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]