HsaEX6042673 @ hg19
Exon Skipping
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:20998627-20999387:-
Coord C1 exon
chr16:20999264-20999387
Coord A exon
chr16:20999015-20999171
Coord C2 exon
chr16:20998627-20998770
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCCATCCCTTTCCTCCCAAGGTA
3' ss Score
9.4
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GACGATTCACTCGCCATCTGAATATCATTTCCATCAATGCCTTTGAGGATGACATTTTAACCAAGATTTTCAGTTCGATTGTTGACTGGCACTTCGGGAAAGGGTTTGATGTGATGTTTTTAAG
Seq A exon
GTACGGAAAGATGCTGGTCCAAGCTACTAAGACAATTTATAGAGATGCAGTGGAGAACTTCTTGCCAACTCCCTCGAAGTCACATTACGTCTTTAACCTGCGGGACTTCTCACGAGTGATTCAAGGGGTCCTGCTGTGCCCTCACACACACCTGCAG
Seq C2 exon
GATGTAGAAAAATGTATCCGGCTTTGGATCCATGAGGTTTATCGGGTCTTCTATGATCGTCTGATTGACAAGGAGGACAGACAGGTCTTTTTCAACATGGTGAAGGAAACCACCTCCAATTGCTTCAAGCAGACCATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.2=100)
A:
PF127752=AAA_7=FE(19.3=100)
C2:
PF127752=AAA_7=PD(4.1=22.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTCACTCGCCATCTGAAT
R:
GCTTGAAGCAATTGGAGGTGG
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)