GgaEX0002950 @ galGal4
Exon Skipping
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:15000861-15002230:-
Coord C1 exon
chr14:15002107-15002230
Coord A exon
chr14:15001859-15002015
Coord C2 exon
chr14:15000861-15001004
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTCCCTCTTGAGGCT
3' ss Score
4.83
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGCGCTTTGTGCGGCACTTGAACGTTGTATCTATCTGTTCTTTTGATGATGACATTCTCACCAAGATTTTTACTGCAGTTGCTGATTGGCATTTTAGCAAAGGCTTTGAGTCCATCTTTCTAAG
Seq A exon
GCTTGGTAAGATAATGGTCCAAGCAACAATGATGATTTACAAAATGGCAGTTGAGAATTTCCTCCCAACTCCTTCAAAATCCCATTATGTCTTTAATCTCCGAGATTTTTCCCGGGTTGTTAAAGGAGTGCTGCTCTGTCCACACACTCATCTGCAG
Seq C2 exon
AGTGAAGACAAGCTGATCCGTCTTTGGATTCATGAGGTGTACCGAGTTTTCTATGATCGCTTAGTTGATGAGGAGGACAGGGAGGTATTCTTTCAGATGGTAAAAAAGACAACATCAGACAGCTTCAAGCAGAACCTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(15.1=100)
A:
PF127752=AAA_7=FE(19.2=100)
C2:
PF127752=AAA_7=PD(4.1=22.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGCACTTGAACGTTGTAT
R:
GGTTCTGCTTGAAGCTGTCTGA
Band lengths:
251-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]