DreEX6096639 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40749597-40772554:+
Coord C1 exon
chr24:40749597-40749962
Coord A exon
chr24:40757389-40757497
Coord C2 exon
chr24:40772316-40772554
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTTGTTGCAGGGC
3' ss Score
10.15
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CAAACACACTCTCTGCTGGTGCGCACCCTGTCTCTGCGGGCCCGAAGGGAGAGCGCGGTCAGCATCTTCAACTTCCGGCCGGTCAACAAGGATTCGGAGCTGGACTTTGCCGATGATGAGTTCAGCAATCACGGAGACTCGGACAGTCGAGGTGGCGCTCTGGCGCTGCCCTGGAGCCGCAGACGCACCAGTGCTCAGAGCTCCTGCAGCCACAGCTCACAGTTCTTCTTCCCCAGCTTTAACATCAATGGCAAACTCATGGTAGCCGTGGAGCAGAACGGCATCTCCAGCCAGGGGCCGCTGACCCCCATGACCCCGCTGACCCCACTGCCCGCCTGCACCATGGAGAAGCTCAAGGAGGAGAGC
Seq A exon
GGCCAGAACTCCTCCAATGAGCTGAGCAGTATGCTGCTGCCCCAGCTGCCCCCAGAGGGCCGAGACCGAGCCCTGAGCGCAACCAGCTACATCACTGACGCCATGGAGG
Seq C2 exon
AGCTGGAGGAGGCGCAGCAGAAGTGTCACCCGTGCTGGTACGTGTTTGCGCACAAGTATCTGGTGTGGACGTGTTCTCCGCGCTGGCTAAAGGTGAAGGAGTGGGTGAAGATCATGGTGATGGACCCCTTTCTGGATCTGGCCATCACTATCTGCATCGTCCTCAACACACTGTTCATGGCGCTGGAGCATTACCCCATGACGGACGAGTTCAACCGCATGCTGTCTGTCGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=0.324 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(50.4=100)
A:
PF119333=DUF3451=PD(12.1=78.4)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAACTCATGGTAGCCG
R:
TCCAGAAAGGGGTCCATCACC
Band lengths:
255-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]