DmeEX6002874 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16492447-16498656:-
Coord C1 exon
chrX:16498445-16498656
Coord A exon
chrX:16498270-16498369
Coord C2 exon
chrX:16492447-16492515
Length
100 bp
Sequences
Splice sites
3' ss Seq
GATTATTTCGATAATTACAGGAA
3' ss Score
5.54
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTCCCGACACTCATCGTATACCTCGCATCAGTCCCGAATATCGTATACCTCACATGGCGATCTACTCGGCGGCATGGCCGTCATGGGCGTCAGCACAATGACCAAGGAGAGCAAATTGCGCAACCGGAACACACGCAATCAATCAGTGGGCGCCACCAATGGCGGCACCACCTGTCTGGACACCAATCACAAGCTCGATCATCGCGACTAC
Seq A exon
GAAATTGGCCTGGAGTGCACGGACGAAGCTGGCAAGATTAAACATCATGACAATCCTTTTATCGAGCCCGTCCAGACACAAACGGTGGTTGATATGAAAG
Seq C2 exon
ATGTGATGGTCCTGAATGACATCATCGAACAGGCCGCTGGTCGGCACAGTCGGGCAAGCGATCGCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.059 C2=0.127
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(29.4=100)
A:
PF119333=DUF3451=PD(10.1=70.6)
C2:
NO
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACTCATCGTATACCTCGC
R:
CGGCCTGTTCGATGATGTCAT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)