DreEX6023031 @ danRer10
Exon Skipping
Gene
ENSDARG00000018032 | scn8ab
Description
sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
Coordinates
chr6:39430857-39436091:-
Coord C1 exon
chr6:39435798-39436091
Coord A exon
chr6:39431435-39431567
Coord C2 exon
chr6:39430857-39431095
Length
133 bp
Sequences
Splice sites
3' ss Seq
CATGTCTCTCCTGTCCTCAGACA
3' ss Score
10.89
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TCGCTGTTGAGCATCCCTGGCTCGCCCTTCATGTCGCGCCGCAGCAGTATATTCAGCTTCAAGGGCTCAGAGAACGAGTTTGCAGACGATGAGCACAGCACGGTGGAGGAGAGCGAGGATCGCCGTGGCTCTCTCTTCGTCCCATACAGACGCAGCAGCTACAGCGGCTACAGTCAGGGCTCTTCTCGAATTAACCCGCTGGCTCCACACCCAGGCTGCAAGAGAAACAGCACGGTGGACTGCAATGGCGTGGTGTCTCTGATCGGGCCTGGACCTGGCCGACTACTGCCTGAG
Seq A exon
ACAACAGAGGTAGAGGGGAAGAGGAAACACTCAGGTTCTCTTATGGTGTCCGTGGATCAGCTCAATACGTCCTTTAGCCGGAAAGAGCGAGCAAACAGTGCAATGACTGTTGTCACCAACACACTTGTGGAAG
Seq C2 exon
AGCTGGAGGAGTCTCAGAGAAAATGTCCGCCCTGCTGGTATAAATTTGCCAACACATTCTTGATATGGGAGTGTTGTCCAATCTGGATAAAAATAAAGGAGATCGTGAACCTCATAGTGATGGATCCATTTGTAGATCTGGCTATCACTATCTGTATTGTGCTGAACACAGTGTTCATGGCCATGGAGCATTATCCCATGACTCCGCGCTTCGAGGAGGTGCTTTCTGTTGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018032-'16-14,'16-13,18-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
PF0310514=SPX=PD(32.0=63.3),PF119333=DUF3451=FE(48.7=100)
A:
PF119333=DUF3451=PD(18.1=80.0)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCGTGGTGTCTCTGAT
R:
ATGCTCCATGGCCATGAACAC
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]