GgaEX7011854 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:93086-97327:-
Coord C1 exon
chrLGE22C19W28_E50C23:96968-97327
Coord A exon
chrLGE22C19W28_E50C23:94998-95133
Coord C2 exon
chrLGE22C19W28_E50C23:93086-93324
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTGCATATGAATGTTGCAGGGT
3' ss Score
5.24
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TCTCTCCTCAGCATCCCGGGCTCCCCTTTCCTCTCCCGACACAACAGCAAGAGCAGCATCTTCAGCTACAAGGGCCGATTCCGCGACCCGGGCTCGGAGAACGAATTCGCCGACGACGAACACAGCACGGTGGAGGAGAGCGAAGGCCGCAGGGATTCCCTCTTCATCCCCATCCGCGGCCGCGACCGACGGAGCAGCTACAGCGGATACAGCGGCTACAGCCAGGGCAGCCGCTCCTCGCGGATATTCCCCAACCTCCGCCGCAACATCAAGAGGAACAGCACGGTGGATTGCAACGGCGTCGTGTCCCTCATCGGCGGCCCGCCTTCCAGCATGCCCGGCGGGCGCCTTCTGCCTGAG
Seq A exon
GGTACGACTGAAATTGAAATTAAGAAGAAACCTGGTGGGTCTCTCTTGGTCTCGATGGATCAGGTGAACGCCTCCTATGGAAGGAAGGATCGTACCAACAGCGTGATGACCGGCTTGACCAACACCCTCGTTGAGG
Seq C2 exon
AGCTGGAGGAGTCCCAGAGGAAGTGTCCCCCATGCTGGTACAAATTTGCCAACACATTCTTGATCTGGGAATGCCACCCCTACTGGATCAAGCTGAAGGAGATAGTGAACTTAATCGTCATGGATCCCTTTGTTGACCTGGCCATCACCATCTGCATTGTGCTCAACACTCTGTTCATGGCAATGGAGCACCATCCTATGACCCCAGAGTTTGAACACGTGCTCTCCGTAGGAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'17-15,'17-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(52.9=100)
A:
PF119333=DUF3451=PD(16.0=78.3)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGAGGAACAGCACGGTG
R:
AATGCAGATGGTGATGGCCAG
Band lengths:
251-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]