DreEX6081067 @ danRer10
Exon Skipping
Gene
ENSDARG00000005775 | scn8aa
Description
sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
Coordinates
chr23:27361524-27366871:-
Coord C1 exon
chr23:27366599-27366871
Coord A exon
chr23:27363655-27363790
Coord C2 exon
chr23:27361524-27361762
Length
136 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTTCCTCCTGACAGCCG
3' ss Score
8.8
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTTTGCTCAGCATCCCAGGCTCTCCATTCCCTTCGAGGCGCAACAGTAAGAGCAGCATCTTCAGCCGCTGTAAAGACGGAGGCTCTGAGAACGAGTTTGCAGATGATGAGCACAGCACGGTTGAGGAGTACGACGAGCGGCGCGACTCCTTCCTAAGCCCTCAGCGTCGCAGCAGCTACACAGGCTTCTACGGCAAGCGCAACAGCACAGTGGATTGCAATGGAGTGGTGTCTCTCATTGGGCCGGGGCCTGGCGGACGCCTTCTGCCTGAG
Seq A exon
CCGACCACTGATCTTGAAATTAAGAAGAAACTCTCAGGCTCTCTCATGGTTTCCGTAGAGCAGCTTAACACATCATTCGGGCGCAAGGAGCGAGCAAACAGCGTGATGAGTGCGTTAACCAACACATTGGTTGAAG
Seq C2 exon
AACTGGAAGAGTCTCAGAGGAAATGTCCACCCTGCTGGTACAAATTCGCCAACACGTTTCTTATCTGGGAGTGTGGCCCTCTATGGATGTCGATAAAGGAGATTGTGAACCTGATTGTAATGGACCCTTTTGTGGACCTGGCTATCACCATTTGCATTGTGCTGAATACTCTCTTCATGGCCATGGAGCATTACCCGATGACGCCGCAATTTGAGCATGTGCTGTCTGTCGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005775-'15-17,'15-16,17-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0310514=SPX=PD(30.8=67.0),PF119333=DUF3451=FE(46.4=100)
A:
PF119333=DUF3451=PD(19.1=80.4)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTTCAGCCGCTGTAA
R:
GCAGGGTGGACATTTCCTCTG
Band lengths:
255-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]