DreEX6067615 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4838120-4839738:+
Coord C1 exon
chr12:4838120-4838314
Coord A exon
chr12:4838703-4838861
Coord C2 exon
chr12:4839618-4839738
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGTCTTAAATTACAGACA
3' ss Score
8.76
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
ACCCTTCGTGCTGCTGGGAAGACTTACATGATCTTCTTCGTGGTGGTCATCTTCCTGGGCTCTTTCTACCTCATCAATCTGATCTTGGCTGTGGTTGCAATGGCATACGACGAGCAGAATGAGGCCACATTGGCCGAGGCTCGTGACAAAGAAGAGGAGTTTCAAAGATTACTTGAGCAGCTCAAGAACCAAGAG
Seq A exon
ACAGGCAGTAAAGCATCTTTGGCCAGCCAGAAAACACAAAGTCGAGGGTCAAACCGGACAGGTTCCCTGCACGATCTTGCAGATGAAGATGTCATAAAGGACTGTAATGGCCGAATAGTACCTCGCCTTATTGTCAACAGAGTTTCCTCTAACAAAGAG
Seq C2 exon
TTATCAGCAGAAGAGGACCAGAAGTCTCTGAGTTCAAAACACAGCATGCAGTACTTGGACCAGCCCAAACTCTCCAAGAGAACAGCTAGTGCTCTCAGTGTACTCACTGCAACTATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.321 C2=0.171
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.8=47.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGCTGGGAAGACTTAC
R:
GGCTGGTCCAAGTACTGCATG
Band lengths:
254-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]