BtaEX6089642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48814318-48817708:-
Coord C1 exon
chr19:48817499-48817708
Coord A exon
chr19:48816734-48816887
Coord C2 exon
chr19:48814318-48814556
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTACCCTTGCTGGTCCACAGGCC
3' ss Score
9.82
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCCTTCGAGCAGCCGGCAAGACCTACATGATCTTTTTCGTGGTCATCATTTTCCTGGGCTCCTTCTACCTCATCAACCTGATCCTGGCTGTGGTAGCCATGGCCTACGCTGAGCAGAACGAGGCCACCCTGGCCGAGGATCAGGAGAAAGAAGAGGAGTTTCAGCAGATGCTGGAGAAATTCAAAAAACAGCAGGAGGAGCTGGAGAAG
Seq A exon
GCCAAGGCCGCCCAGGCTCTGGAAGGTGGGGAGGTGGACGGGGACCCAGCACACAGCAAAGACTGCAACGGCAGCCTGGACACATCGGCGGGGGAGAAGGGGCCTCCGAGGCCAAGCTGCGGCACAGACAGCGGTATTTCCGATGCCATGGAAG
Seq C2 exon
AGCTGGAAGAGGCCCACCAGAAGTGCCCACCATGGTGGTACAAATGTTCCCATAAAGTGCTGATATGGAACTGCTGCACCCCGTGGGTGAAGTTCAAGAAGATCGTCAACCTGATCGTCATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACCCTCTTCATGGCCATGGAGCATTACCCAATGACAGAGCACTTTGACAGTGTGCTCAACGTGGGCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.654 C2=0.013
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.0=44.3)
A:
NO
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCTCCTTCTACCTCAT
R:
TTCTTGAACTTCACCCACGGG
Band lengths:
257-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]