RnoEX6050158 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94530499-94534244:-
Coord C1 exon
chr10:94534035-94534244
Coord A exon
chr10:94533143-94533296
Coord C2 exon
chr10:94530499-94530737
Length
154 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTGCTGATTTATAGGCT
3' ss Score
7.92
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACCCTACGAGCTGCTGGCAAGACCTACATGATCTTCTTCGTGGTCATCATCTTCCTGGGCTCCTTCTACCTCATCAATCTGATCCTGGCCGTGGTGGCCATGGCGTACGCTGAGCAGAATGAGGCTACCCTGGCCGAAGACCAGGAGAAAGAGGAGGAGTTCCAACAGATGCTTGAGAAATACAAAAAACATCAGGAGGAAGTGGAAAAG
Seq A exon
GCTAAGGCTGCCCAGGCTCTGGAAAGTGGAGAGGAGGCAGATGGGGACCCAACCCACAACAAAGACTGCAATGGGAGCCTGGATGCATCCGGGGAGAAGGGGCCCCCAAGGCCAAGCTGCAGCGCAGACAGTGCCATCTCAGATGCTATGGAGG
Seq C2 exon
AGCTGGAAGAGGCCCATCAGAAGTGCCCACCGTGGTGGTACAAGTGTGCACACAAAGTCCTCATCTGGAACTGCTGTGCCCCGTGGGTGAAGTTCAAACATATAATCTACCTGATCGTCATGGACCCCTTTGTGGACCTGGGTATCACCATCTGCATTGTGCTCAACACCCTCTTCATGGCCATGGAGCACTACCCCATGACCGAGCACTTTGACAACGTGCTCTCCGTGGGCAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'14-13,'14-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.731 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.0=44.3)
A:
NO
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACGCTGAGCAGAATGAGG
R:
GTCCACAAAGGGGTCCATGAC
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]