GgaEX6027189 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1644963-1646135:-
Coord C1 exon
chr27:1645885-1646135
Coord A exon
chr27:1645577-1645700
Coord C2 exon
chr27:1644963-1645201
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCTCCTCTCCTCTAGTTC
3' ss Score
10.48
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTATGCCCTTGTGAATTATTCACCCTGCCCAAATTCAAACCATGTGAGGTTTTGGGAAGTTCAGACTGCAGTGATGGAGATGTGGTTGCTGCAGTTGCAGGACAGGCAGTCCAGCAGCAGTTCCCTGCACAGCAGCGCGGCCGGGAAGAAGAGCGACTCGGATCTGAACAGCGACCAGGACAAGGCAAAGGACTGCAATGGGCAGGTGGTCCCCAAGGTTGTGCTGCAGCGCTCTGCCACGGTGATCGAA
Seq A exon
TTCAACCCAGCCAACGAGACAGAGAAATCAGACTCCAACCACCTCACCGTGGGCAATCAAGATGGGCCAGGGCTTGAGAAGAGGGTGGGGAGTGCCGTCAGCGTCATCTCCAACACCATGGAAG
Seq C2 exon
AGCTGGAGGAAGCTCACCAGAAGTGCCCATCCTGGTGGTACAAATTTGCCCACACGTTCCTGGTGTGGGACTGCTGCTATCCGTGGCTGAAGCTGAAGCAATTTGTCAAGCTGGTGGTGATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACGCTGTTCATGGCCATGGAGCACTACCCCATGACAGAGGAGTTTGAGAACGTGCTGACCGTGGGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.357 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGACAAGGCAAAGGAC
R:
CATGAACAGCGTGTTGAGCAC
Band lengths:
257-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]